Dotfiles

About

This web page is an org-tangled version of my dotfiles. It can be installed with the bundled install.py, which symlinks the files into the home directory.

All Operating Systems

.condarc

changeps1: true
verbosity: 1

.config

alacritty

  1. alacritty.yml

    This config is just too long to display here, so I leave it until I can get max_height blocks working with liquid matter.

dvc

  1. config
    [core]
        autostage = true
    

fish

  1. config.fish
    # Function to handle terminal printing with conditions
    function vterm_printf
        if begin
                [ -n "$TMUX" ]; and string match -q -r "screen|tmux" "$TERM"
            end
            # tell tmux to pass the escape sequences through
            printf "\ePtmux;\e\e]%s\007\e\\" "$argv"
        else if string match -q -- "screen*" "$TERM"
            # GNU screen (screen, screen-256color, screen-256color-bce)
            printf "\eP\e]%s\007\e\\" "$argv"
        else
            printf "\e]%s\e\\" "$argv"
        end
    end
    
    if [ "$INSIDE_EMACS" = vterm ]
        function clear
            vterm_printf "51;Evterm-clear-scrollback"
            tput clear
        end
    end
    
    function fish_title
        hostname
        echo ":"
        prompt_pwd
    end
    
    function vterm_prompt_end
        vterm_printf '51;A'(whoami)'@'(hostname)':'(pwd)
    end
    functions --copy fish_prompt vterm_old_fish_prompt
    function fish_prompt --description 'Write out the prompt; do not replace this. Instead, put this at end of your file.'
        # Remove the trailing newline from the original prompt. This is done
        # using the string builtin from fish, but to make sure any escape codes
        # are correctly interpreted, use %b for printf.
        printf "%b" (string join "\n" (vterm_old_fish_prompt))
        vterm_prompt_end
    end
    
    function find_file
        set -q argv[1]; or set argv[1] "."
        vterm_cmd find-file (realpath "$argv")
    end
    
    function say
        vterm_cmd message "%s" "$argv"
    end
    
    # Convert remote function
    function remote
        set -l remote_host "$REMOTE_HOST"
        set -l remote_path "$REMOTE_PATH"
    
        ssh -t "$REMOTE_HOST" "cd $REMOTE_PATH && exec \$SHELL -l"
    end
    
    # Convert coder-start function
    function coder-start
        coder start $CODER_USERNAME/$CODER_INSTANCE_NAME
    end
    
    # Convert dcv-connect function
    function dcv-connect
        coder port-forward $CODER_USERNAME/$CODER_INSTANCE_NAME --tcp 8443:8443 >/dev/null &
        open -a "DCV Viewer" --args localhost:8443
    end
    
    # Aliases
    alias ls='ls --color=auto'
    
    # if on mac run the following:
    if test -d /opt/homebrew/bin
        # Add Homebrew to PATH
        set -gx PATH /opt/homebrew/bin $PATH
        # Correctly use command substitution for setting shell environment variables
        env /opt/homebrew/bin/brew shellenv | source
    end
    
    alias gitroot='cd (git rev-parse --show-toplevel)'
    
    # Export statements
    set -gx LESSOPEN "| pygmentize -g %s"
    set -gx LESS -R
    set -gx PYENV_VERSION 3.8.13
    set PATH $PATH /Users/jsigman/.local/bin
    
    export PATH="/usr/local/sbin:$PATH"
    export PATH="/usr/local/opt/openjdk/bin:$PATH"
    
    export PYENV_ROOT="$HOME/.pyenv"
    export PATH="$PYENV_ROOT/bin:$PATH"
    pyenv init --path | source
    
    export NVM_DIR="$HOME/.nvm"
    [ -s "/usr/local/opt/nvm/nvm.sh" ] && \. "/usr/local/opt/nvm/nvm.sh" # This loads nvm
    
    # to build emacs
    export PATH="/opt/homebrew/opt/llvm/bin:$PATH"
    export LDFLAGS="-L/opt/homebrew/opt/llvm@12/lib"
    export LDFLAGS="-L/opt/homebrew/lib $LDFLAGS"
    export LDFLAGS="-L/opt/homebrew/lib/gcc/11 $LDFLAGS"
    export CPPFLAGS="-I/opt/homebrew/opt/llvm@12/include"
    export CPPFLAGS="-I/opt/homebrew/include $CPPFLAGS"
    export LD_LIBRARY_PATH="/opt/homebrew/lib/:/opt//homebrew/lib/gcc/11/"
    export LIBRARY_PATH="/opt/homebrew/lib/:/opt//homebrew/lib/gcc/11/"
    
    export RIPGREP_CONFIG_PATH="$HOME/.config/ripgreprc"
    
    if test -d "$HOME/Applications/Emacs.app/Contents/MacOS/bin/"
        set -gx PATH $HOME/Applications/Emacs.app/Contents/MacOS/bin $PATH
    end
    
    # set environment variable from file
    set -gx OPENAI_API_KEY (cat ~/.openai/emacs-key.txt)
    
    # Created by `pipx` on 2024-02-01 09:45:16
    export PATH="$PATH:/Users/jsigman/.local/bin"
    
    
    # Initialization scripts adaptation (needs manual intervention for exact paths and commands)
    # Example for pyenv, adjust according to specific init scripts provided or manually
    pyenv init - | source
    starship init fish | source
    direnv hook fish | source
    
    direnv export fish | source # run once to load direnv environment on terminal start
    

flake8

[flake8]
exclude =
    typings/

karabiner

  1. karabiner.json
    {
        "global": {
            "check_for_updates_on_startup": true,
            "show_in_menu_bar": true,
            "show_profile_name_in_menu_bar": false
        },
        "profiles": [
            {
                "complex_modifications": {
                    "parameters": {
                        "basic.simultaneous_threshold_milliseconds": 50,
                        "basic.to_delayed_action_delay_milliseconds": 500,
                        "basic.to_if_alone_timeout_milliseconds": 1000,
                        "basic.to_if_held_down_threshold_milliseconds": 500,
                        "mouse_motion_to_scroll.speed": 100
                    },
                    "rules": [
                        {
                            "description": "Swap option and command in Amazon Workspaces",
                            "manipulators": [
                                {
                                    "conditions": [
                                        {
                                            "bundle_identifiers": [
                                                "^com\\.amazon\\.workspaces$"
                                            ],
                                            "type": "frontmost_application_if"
                                        }
                                    ],
                                    "from": {
                                        "key_code": "right_command",
                                        "modifiers": {
                                            "optional": [
                                                "any"
                                            ]
                                        }
                                    },
                                    "to": [
                                        {
                                            "key_code": "left_option"
                                        }
                                    ],
                                    "type": "basic"
                                }
                            ]
                        },
                        {
                            "description": "Swap option and command in Kitty",
                            "manipulators": [
                                {
                                    "conditions": [
                                        {
                                            "bundle_identifiers": [
                                                "^net\\.kovidgoyal\\.kitty$"
                                            ],
                                            "type": "frontmost_application_if"
                                        }
                                    ],
                                    "from": {
                                        "key_code": "right_command",
                                        "modifiers": {
                                            "optional": [
                                                "any"
                                            ]
                                        }
                                    },
                                    "to": [
                                        {
                                            "key_code": "left_option"
                                        }
                                    ],
                                    "type": "basic"
                                }
                            ]
                        },
                        {
                            "description": "Swap option and command in Term",
                            "manipulators": [
                                {
                                    "conditions": [
                                        {
                                            "bundle_identifiers": [
                                                "^com\\.apple\\.Terminal$"
                                            ],
                                            "type": "frontmost_application_if"
                                        }
                                    ],
                                    "from": {
                                        "key_code": "right_command",
                                        "modifiers": {
                                            "optional": [
                                                "any"
                                            ]
                                        }
                                    },
                                    "to": [
                                        {
                                            "key_code": "left_option"
                                        }
                                    ],
                                    "type": "basic"
                                }
                            ]
                        }
                    ]
                },
                "devices": [
                    {
                        "disable_built_in_keyboard_if_exists": false,
                        "fn_function_keys": [],
                        "identifiers": {
                            "is_keyboard": true,
                            "is_pointing_device": false,
                            "product_id": 591,
                            "vendor_id": 1452
                        },
                        "ignore": false,
                        "manipulate_caps_lock_led": true,
                        "simple_modifications": []
                    }
                ],
                "fn_function_keys": [
                    {
                        "from": {
                            "key_code": "f1"
                        },
                        "to": [
                            {
                                "consumer_key_code": "display_brightness_decrement"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f2"
                        },
                        "to": [
                            {
                                "consumer_key_code": "display_brightness_increment"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f3"
                        },
                        "to": [
                            {
                                "key_code": "mission_control"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f4"
                        },
                        "to": [
                            {
                                "key_code": "launchpad"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f5"
                        },
                        "to": [
                            {
                                "key_code": "illumination_decrement"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f6"
                        },
                        "to": [
                            {
                                "key_code": "illumination_increment"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f7"
                        },
                        "to": [
                            {
                                "consumer_key_code": "rewind"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f8"
                        },
                        "to": [
                            {
                                "consumer_key_code": "play_or_pause"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f9"
                        },
                        "to": [
                            {
                                "consumer_key_code": "fast_forward"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f10"
                        },
                        "to": [
                            {
                                "consumer_key_code": "mute"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f11"
                        },
                        "to": [
                            {
                                "consumer_key_code": "volume_decrement"
                            }
                        ]
                    },
                    {
                        "from": {
                            "key_code": "f12"
                        },
                        "to": [
                            {
                                "consumer_key_code": "volume_increment"
                            }
                        ]
                    }
                ],
                "name": "Default profile",
                "parameters": {
                    "delay_milliseconds_before_open_device": 1000
                },
                "selected": true,
                "simple_modifications": [
                    {
                        "from": {
                            "key_code": "caps_lock"
                        },
                        "to": [
                            {
                                "key_code": "left_control"
                            }
                        ]
                    }
                ],
                "virtual_hid_keyboard": {
                    "country_code": 0,
                    "indicate_sticky_modifier_keys_state": true,
                    "mouse_key_xy_scale": 100
                }
            }
        ]
    }
    

kitty

  1. kitty.conf

    This breaks liquid matter for right now, so I’m not going to share it as a web page until I can figure this out.

ripgreprc

# Follow symlinks
--follow
# Because who cares about case!?
--smart-case
--max-depth=6

starship.toml

# Don't print a new line at the start of the prompt
add_newline = false

format = """
$hostname\
$shlvl\
$kubernetes\
$directory\
$git_branch\
$git_commit\
$git_state\
$git_status\
$hg_branch\
$docker_context\
$package\
$cmake\
$dart\
$dotnet\
$elixir\
$elm\
$erlang\
$golang\
$helm\
$java\
$julia\
$kotlin\
$nim\
$ocaml\
$perl\
$php\
$purescript\
$python\
$ruby\
$rust\
$scala\
$swift\
$terraform\
$vagrant\
$zig\
$nix_shell\
$conda\
$memory_usage\
$aws\
$gcloud\
$openstack\
$env_var\
$crystal\
$custom\
$cmd_duration\
$line_break\
$lua\
$jobs\
$time\
$status\
$shell\
$character"""

[directory]
style="red"

[cmd_duration]
min_time = 4

[conda]
disabled=true
style="blue"
symbol=""

[git_branch]
symbol = "🌱 "
truncation_length = 20
truncation_symbol = ""
ignore_branches = ["master", "main"]

[python]
disabled=false
symbol=""
pyenv_version_name = true
pyenv_prefix = ""
style="red"

[aws]
disabled=true

[hostname]
disabled=false
ssh_only=true
ssh_symbol=''
format='[$ssh_symbol$hostname]($style) '

.gitconfig

[core]
    excludesfile = ~/.gitignore
    [filter "lfs"]
    required = true
    clean = git-lfs clean -- %f
    smudge = git-lfs smudge -- %f
    process = git-lfs filter-process
[user]
    name = John Sigman
    email = john.sigman@gmail.com
[github]
    user = jsigman
[gitlab]
    user = johnny.sigman
[pull]
    rebase = false
[url "ssh://git@gitlab.com/"]
    insteadOf = https://gitlab.com/

.gitignore

# Node
npm-debug.log

# Mac
.DS_Store

# Windows
Thumbs.db

# WebStorm
.idea/

# vi
*~

# emacs
\#*
.dir-locals.el
pyrightconfig.json
.projectile
.ob-jupyter/

# python
typings/

# General
log/
*.log

# etc...

# I often use these folders to store non-source material
/notes

# direnv
/.envrc
*.envrc

# lsyncd
lsyncd.conf

.ipython

org.py

File located at .ipython/profile_default/startup/org.py.

# import IPython
# from tabulate import tabulate


# class OrgFormatter(IPython.core.formatters.BaseFormatter):
#     def __call__(self, obj):
#         try:
#             return tabulate(obj, headers="keys", tablefmt="orgtbl", showindex="always")
#         except Exception:
#             return None


# ip = get_ipython()
# ip.display_formatter.formatters["text/org"] = OrgFormatter()

.pdbrc

# Enable tab completion                                                         
import rlcompleter                                                              
import pdb                                                                      

pdb.Pdb.complete = rlcompleter.Completer(locals()).complete

# Print instance variables (usage "pi classInst")
alias pi for k in %1.__dict__.keys(): print("%1.",k,"=",%1.__dict__[k])

.pdbrc.py

import pdb
from fancycompleter import Color

def _pdbrc_init():
    """Save history across sessions."""

    import atexit
    import readline
    from os import getenv
    from pathlib import Path

    XDG_CACHE_HOME = getenv("XDG_CACHE_HOME", "~/.cache")

    HIST_FILE = getenv("PDB_HIST_FILE", f"{XDG_CACHE_HOME}/python/pdb_history")
    HIST_SIZE = getenv("PDB_HIST_SIZE", "10000")

    history_file = Path(HIST_FILE).expanduser().resolve()
    history_length = int(HIST_SIZE)

    if not history_file.exists():
        history_file.parent.mkdir(parents=True, exist_ok=True)
        history_file.touch()

    readline.read_history_file(history_file)
    readline.set_history_length(history_length)

    atexit.register(readline.write_history_file, history_file)

_pdbrc_init()

del _pdbrc_init

class Config(pdb.DefaultConfig):

    prompt = "(Pdb++) "
    highlight = True
    sticky_by_default = True
    bg = "dark"
    use_pygments = True
    colorscheme = None
    use_terminal256formatter = None  # Defaults to `"256color" in $TERM`.
    editor = "${EDITOR:-vi}"  # use $EDITOR if set, else default to vi
    stdin_paste = None  # for emacs, you can use my bin/epaste script
    truncate_long_lines = True
    exec_if_unfocused = None
    disable_pytest_capturing = False
    encodings = ("utf-8", "latin-1")

    enable_hidden_frames = True
    show_hidden_frames_count = True

    line_number_color = Color.red
    filename_color = Color.red
    current_line_color = "39;49;7"  # default fg, bg, inversed

    show_traceback_on_error = True
    show_traceback_on_error_limit = None

    # Default keyword arguments passed to ``Pdb`` constructor.
    default_pdb_kwargs = {}

.pylintrc

[MASTER]

# A comma-separated list of package or module names from where C extensions may
# be loaded. Extensions are loading into the active Python interpreter and may
# run arbitrary code.
extension-pkg-whitelist=

# Add files or directories to the blacklist. They should be base names, not
# paths.
ignore=CVS

# Add files or directories matching the regex patterns to the blacklist. The
# regex matches against base names, not paths.
ignore-patterns=

# Python code to execute, usually for sys.path manipulation such as
# pygtk.require().
#init-hook=

# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the
# number of processors available to use.
jobs=0

# Control the amount of potential inferred values when inferring a single
# object. This can help the performance when dealing with large functions or
# complex, nested conditions.
limit-inference-results=100

# List of plugins (as comma separated values of python modules names) to load,
# usually to register additional checkers.
load-plugins=

# Pickle collected data for later comparisons.
persistent=yes

# Specify a configuration file.
#rcfile=

# When enabled, pylint would attempt to guess common misconfiguration and emit
# user-friendly hints instead of false-positive error messages.
suggestion-mode=yes

# Allow loading of arbitrary C extensions. Extensions are imported into the
# active Python interpreter and may run arbitrary code.
unsafe-load-any-extension=no


[MESSAGES CONTROL]

# Only show warnings with the listed confidence levels. Leave empty to show
# all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED.
confidence=

# Disable the message, report, category or checker with the given id(s). You
# can either give multiple identifiers separated by comma (,) or put this
# option multiple times (only on the command line, not in the configuration
# file where it should appear only once). You can also use "--disable=all" to
# disable everything first and then reenable specific checks. For example, if
# you want to run only the similarities checker, you can use "--disable=all
# --enable=similarities". If you want to run only the classes checker, but have
# no Warning level messages displayed, use "--disable=all --enable=classes
# --disable=W".
disable=print-statement,
        parameter-unpacking,
        unpacking-in-except,
        old-raise-syntax,
        backtick,
        long-suffix,
        old-ne-operator,
        old-octal-literal,
        import-star-module-level,
        non-ascii-bytes-literal,
        raw-checker-failed,
        bad-inline-option,
        locally-disabled,
        file-ignored,
        suppressed-message,
        useless-suppression,
        deprecated-pragma,
        use-symbolic-message-instead,
        apply-builtin,
        basestring-builtin,
        buffer-builtin,
        cmp-builtin,
        coerce-builtin,
        execfile-builtin,
        file-builtin,
        long-builtin,
        raw_input-builtin,
        reduce-builtin,
        standarderror-builtin,
        unicode-builtin,
        xrange-builtin,
        coerce-method,
        delslice-method,
        getslice-method,
        setslice-method,
        no-absolute-import,
        old-division,
        dict-iter-method,
        dict-view-method,
        next-method-called,
        metaclass-assignment,
        indexing-exception,
        raising-string,
        reload-builtin,
        oct-method,
        hex-method,
        nonzero-method,
        cmp-method,
        input-builtin,
        round-builtin,
        intern-builtin,
        unichr-builtin,
        map-builtin-not-iterating,
        zip-builtin-not-iterating,
        range-builtin-not-iterating,
        filter-builtin-not-iterating,
        using-cmp-argument,
        eq-without-hash,
        div-method,
        idiv-method,
        rdiv-method,
        exception-message-attribute,
        invalid-str-codec,
        sys-max-int,
        bad-python3-import,
        deprecated-string-function,
        deprecated-str-translate-call,
        deprecated-itertools-function,
        deprecated-types-field,
        next-method-defined,
        dict-items-not-iterating,
        dict-keys-not-iterating,
        dict-values-not-iterating,
        deprecated-operator-function,
        deprecated-urllib-function,
        xreadlines-attribute,
        deprecated-sys-function,
        exception-escape,
        comprehension-escape,
        missing-docstring

# Enable the message, report, category or checker with the given id(s). You can
# either give multiple identifier separated by comma (,) or put this option
# multiple time (only on the command line, not in the configuration file where
# it should appear only once). See also the "--disable" option for examples.
enable=c-extension-no-member


[REPORTS]

# Python expression which should return a note less than 10 (10 is the highest
# note). You have access to the variables errors warning, statement which
# respectively contain the number of errors / warnings messages and the total
# number of statements analyzed. This is used by the global evaluation report
# (RP0004).
evaluation=10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10)

# Template used to display messages. This is a python new-style format string
# used to format the message information. See doc for all details.
#msg-template=

# Set the output format. Available formats are text, parseable, colorized, json
# and msvs (visual studio). You can also give a reporter class, e.g.
# mypackage.mymodule.MyReporterClass.
output-format=text

# Tells whether to display a full report or only the messages.
reports=no

# Activate the evaluation score.
score=yes


[REFACTORING]

# Maximum number of nested blocks for function / method body
max-nested-blocks=5

# Complete name of functions that never returns. When checking for
# inconsistent-return-statements if a never returning function is called then
# it will be considered as an explicit return statement and no message will be
# printed.
never-returning-functions=sys.exit


[LOGGING]

# Format style used to check logging format string. `old` means using %
# formatting, while `new` is for `{}` formatting.
logging-format-style=old

# Logging modules to check that the string format arguments are in logging
# function parameter format.
logging-modules=logging


[SPELLING]

# Limits count of emitted suggestions for spelling mistakes.
max-spelling-suggestions=4

# Spelling dictionary name. Available dictionaries: none. To make it working
# install python-enchant package..
spelling-dict=

# List of comma separated words that should not be checked.
spelling-ignore-words=

# A path to a file that contains private dictionary; one word per line.
spelling-private-dict-file=

# Tells whether to store unknown words to indicated private dictionary in
# --spelling-private-dict-file option instead of raising a message.
spelling-store-unknown-words=no


[MISCELLANEOUS]

# List of note tags to take in consideration, separated by a comma.
notes=FIXME,
      XXX,
      TODO


[TYPECHECK]

# List of decorators that produce context managers, such as
# contextlib.contextmanager. Add to this list to register other decorators that
# produce valid context managers.
contextmanager-decorators=contextlib.contextmanager

# List of members which are set dynamically and missed by pylint inference
# system, and so shouldn't trigger E1101 when accessed. Python regular
# expressions are accepted.
generated-members=

# Tells whether missing members accessed in mixin class should be ignored. A
# mixin class is detected if its name ends with "mixin" (case insensitive).
ignore-mixin-members=yes

# Tells whether to warn about missing members when the owner of the attribute
# is inferred to be None.
ignore-none=yes

# This flag controls whether pylint should warn about no-member and similar
# checks whenever an opaque object is returned when inferring. The inference
# can return multiple potential results while evaluating a Python object, but
# some branches might not be evaluated, which results in partial inference. In
# that case, it might be useful to still emit no-member and other checks for
# the rest of the inferred objects.
ignore-on-opaque-inference=yes

# List of class names for which member attributes should not be checked (useful
# for classes with dynamically set attributes). This supports the use of
# qualified names.
ignored-classes=optparse.Values,thread._local,_thread._local

# List of module names for which member attributes should not be checked
# (useful for modules/projects where namespaces are manipulated during runtime
# and thus existing member attributes cannot be deduced by static analysis. It
# supports qualified module names, as well as Unix pattern matching.
ignored-modules=

# Show a hint with possible names when a member name was not found. The aspect
# of finding the hint is based on edit distance.
missing-member-hint=yes

# The minimum edit distance a name should have in order to be considered a
# similar match for a missing member name.
missing-member-hint-distance=1

# The total number of similar names that should be taken in consideration when
# showing a hint for a missing member.
missing-member-max-choices=1


[VARIABLES]

# List of additional names supposed to be defined in builtins. Remember that
# you should avoid defining new builtins when possible.
additional-builtins=

# Tells whether unused global variables should be treated as a violation.
allow-global-unused-variables=yes

# List of strings which can identify a callback function by name. A callback
# name must start or end with one of those strings.
callbacks=cb_,
          _cb

# A regular expression matching the name of dummy variables (i.e. expected to
# not be used).
dummy-variables-rgx=_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_

# Argument names that match this expression will be ignored. Default to name
# with leading underscore.
ignored-argument-names=_.*|^ignored_|^unused_

# Tells whether we should check for unused import in __init__ files.
init-import=no

# List of qualified module names which can have objects that can redefine
# builtins.
redefining-builtins-modules=six.moves,past.builtins,future.builtins,builtins,io


[FORMAT]

# Expected format of line ending, e.g. empty (any line ending), LF or CRLF.
expected-line-ending-format=

# Regexp for a line that is allowed to be longer than the limit.
ignore-long-lines=^\s*(# )?<?https?://\S+>?$

# Number of spaces of indent required inside a hanging or continued line.
# indent-after-paren=4

# String used as indentation unit. This is usually "    " (4 spaces) or "\t" (1
# tab).
indent-string='    '

# Maximum number of characters on a single line.
max-line-length=120

# Maximum number of lines in a module.
max-module-lines=1000

# List of optional constructs for which whitespace checking is disabled. `dict-
# separator` is used to allow tabulation in dicts, etc.: {1  : 1,\n222: 2}.
# `trailing-comma` allows a space between comma and closing bracket: (a, ).
# `empty-line` allows space-only lines.
no-space-check=trailing-comma,
               dict-separator

# Allow the body of a class to be on the same line as the declaration if body
# contains single statement.
single-line-class-stmt=no

# Allow the body of an if to be on the same line as the test if there is no
# else.
single-line-if-stmt=no


[SIMILARITIES]

# Ignore comments when computing similarities.
ignore-comments=yes

# Ignore docstrings when computing similarities.
ignore-docstrings=yes

# Ignore imports when computing similarities.
ignore-imports=no

# Minimum lines number of a similarity.
min-similarity-lines=4


[BASIC]

# Naming style matching correct argument names.
argument-naming-style=any #snake_case

# Regular expression matching correct argument names. Overrides argument-
# naming-style.
#argument-rgx=

# Naming style matching correct attribute names.
attr-naming-style=any #snake_case

# Regular expression matching correct attribute names. Overrides attr-naming-
# style.
#attr-rgx=

# Bad variable names which should always be refused, separated by a comma.
bad-names=foo,
          bar,
          baz,
          toto,
          tutu,
          tata

# Naming style matching correct class attribute names.
class-attribute-naming-style=any

# Regular expression matching correct class attribute names. Overrides class-
# attribute-naming-style.
#class-attribute-rgx=

# Naming style matching correct class names.
class-naming-style=PascalCase

# Regular expression matching correct class names. Overrides class-naming-
# style.
#class-rgx=

# Naming style matching correct constant names.
const-naming-style=UPPER_CASE

# Regular expression matching correct constant names. Overrides const-naming-
# style.
#const-rgx=

# Minimum line length for functions/classes that require docstrings, shorter
# ones are exempt.
docstring-min-length=-1

# Naming style matching correct function names.
function-naming-style=any #snake_case

# Regular expression matching correct function names. Overrides function-
# naming-style.
#function-rgx=

# Good variable names which should always be accepted, separated by a comma.
good-names=i,
           j,
           k,
           ex,
           Run,
           _

# Include a hint for the correct naming format with invalid-name.
include-naming-hint=no

# Naming style matching correct inline iteration names.
inlinevar-naming-style=any

# Regular expression matching correct inline iteration names. Overrides
# inlinevar-naming-style.
#inlinevar-rgx=

# Naming style matching correct method names.
method-naming-style=any #snake_case

# Regular expression matching correct method names. Overrides method-naming-
# style.
#method-rgx=

# Naming style matching correct module names.
module-naming-style=any #snake_case

# Regular expression matching correct module names. Overrides module-naming-
# style.
#module-rgx=

# Colon-delimited sets of names that determine each other's naming style when
# the name regexes allow several styles.
name-group=

# Regular expression which should only match function or class names that do
# not require a docstring.
no-docstring-rgx=^_

# List of decorators that produce properties, such as abc.abstractproperty. Add
# to this list to register other decorators that produce valid properties.
# These decorators are taken in consideration only for invalid-name.
property-classes=abc.abstractproperty

# Naming style matching correct variable names.
variable-naming-style=any #snake_case

# Regular expression matching correct variable names. Overrides variable-
# naming-style.
#variable-rgx=


[STRING]

# This flag controls whether the implicit-str-concat-in-sequence should
# generate a warning on implicit string concatenation in sequences defined over
# several lines.
check-str-concat-over-line-jumps=no


[IMPORTS]

# Allow wildcard imports from modules that define __all__.
allow-wildcard-with-all=no

# Analyse import fallback blocks. This can be used to support both Python 2 and
# 3 compatible code, which means that the block might have code that exists
# only in one or another interpreter, leading to false positives when analysed.
analyse-fallback-blocks=no

# Deprecated modules which should not be used, separated by a comma.
deprecated-modules=optparse,tkinter.tix

# Create a graph of external dependencies in the given file (report RP0402 must
# not be disabled).
ext-import-graph=

# Create a graph of every (i.e. internal and external) dependencies in the
# given file (report RP0402 must not be disabled).
import-graph=

# Create a graph of internal dependencies in the given file (report RP0402 must
# not be disabled).
int-import-graph=

# Force import order to recognize a module as part of the standard
# compatibility libraries.
known-standard-library=

# Force import order to recognize a module as part of a third party library.
known-third-party=enchant


[CLASSES]

# List of method names used to declare (i.e. assign) instance attributes.
defining-attr-methods=__init__,
                      __new__,
                      setUp

# List of member names, which should be excluded from the protected access
# warning.
exclude-protected=_asdict,
                  _fields,
                  _replace,
                  _source,
                  _make

# List of valid names for the first argument in a class method.
valid-classmethod-first-arg=cls

# List of valid names for the first argument in a metaclass class method.
valid-metaclass-classmethod-first-arg=cls


[DESIGN]

# Maximum number of arguments for function / method.
max-args=10

# Maximum number of attributes for a class (see R0902).
max-attributes=7

# Maximum number of boolean expressions in an if statement.
max-bool-expr=5

# Maximum number of branch for function / method body.
max-branches=12

# Maximum number of locals for function / method body.
max-locals=15

# Maximum number of parents for a class (see R0901).
max-parents=7

# Maximum number of public methods for a class (see R0904).
max-public-methods=20

# Maximum number of return / yield for function / method body.
max-returns=6

# Maximum number of statements in function / method body.
max-statements=50

# Minimum number of public methods for a class (see R0903).
min-public-methods=2


[EXCEPTIONS]

# Exceptions that will emit a warning when being caught. Defaults to
# "BaseException, Exception".
overgeneral-exceptions=BaseException,
                       Exception

.screenrc

shell -$SHELL # so that it loads .bash_profile / .zprofile
shell -$SHELL -c "direnv reload 2>/dev/null; exec $SHELL"
termcapinfo xterm* ti@:te@
defscrollback 10000

.tmux.conf

set-option -g mouse on

# make scrolling with wheels work
bind -n WheelUpPane if-shell -F -t = "#{mouse_any_flag}" "send-keys -M" "if -Ft= '#{pane_in_mode}' 'send-keys -M' 'select-pane -t=; copy-mode -e; send-keys -M'"
bind -n WheelDownPane select-pane -t= \; send-keys -M

Linux

.bash profile

pathmunge () {
        if ! echo $PATH | /bin/egrep -q "(^|:)$1($|:)" ; then
           if [ "$2" = "after" ] ; then
              PATH=$PATH:$1
           else
              PATH=$1:$PATH
           fi
        fi
}

# TERMINAL -- TAB COMPLETEION, IGNORE CASE
bind 'set completion-ignore-case on'

export PYENV_ROOT="$HOME/.pyenv"
export PATH="$PYENV_ROOT/bin:$PATH"
eval "$(pyenv init --path)"

export PYENV_VERSION=3.8.13
eval "$(pyenv init -)"

eval "$(starship init bash)"
eval "$(direnv hook bash)"

direnv reload 2>/dev/null
export RIPGREP_CONFIG_PATH="${HOME}/.config/ripgreprc"
alias ls='ls --color=auto'

shopt -s histappend # append to history file, don't overwrite it
HISTSIZE=10000
HISTFILESIZE=10000
HISTTIMEFORMAT="%d/%m/%y %T "
PROMPT_COMMAND="history -a; history -c; history -r; $PROMPT_COMMAND" # immediate access to history from all terms

export LESSOPEN="| pygmentize -g %s"
export LESS='-R'

MacOS

.zprofile

eval "$(/opt/homebrew/bin/brew shellenv)"

export PATH="/usr/local/sbin:$PATH"
export PATH="/usr/local/opt/openjdk/bin:$PATH"

export PYENV_ROOT="$HOME/.pyenv"
export PATH="$PYENV_ROOT/bin:$PATH"
eval "$(pyenv init --path)"

export NVM_DIR="$HOME/.nvm"
[ -s "/usr/local/opt/nvm/nvm.sh" ] && \. "/usr/local/opt/nvm/nvm.sh" # This loads nvm

# to build emacs
export PATH="/opt/homebrew/opt/llvm/bin:$PATH"
export LDFLAGS="-L/opt/homebrew/opt/llvm@12/lib"
export LDFLAGS="-L/opt/homebrew/lib $LDFLAGS"
export LDFLAGS="-L/opt/homebrew/lib/gcc/11 $LDFLAGS"
export CPPFLAGS="-I/opt/homebrew/opt/llvm@12/include"
export CPPFLAGS="-I/opt/homebrew/include $CPPFLAGS"
export LD_LIBRARY_PATH="/opt/homebrew/lib/:/opt//homebrew/lib/gcc/11/"
export LIBRARY_PATH="/opt/homebrew/lib/:/opt//homebrew/lib/gcc/11/"

export RIPGREP_CONFIG_PATH="${HOME}/.config/ripgreprc"

if [ -d "$HOME/Applications/Emacs.app/Contents/MacOS/bin/" ]; then
    export PATH="$HOME/Applications/Emacs.app/Contents/MacOS/bin:$PATH"
fi

# set environment variable from file
export OPENAI_API_KEY=$(cat ~/.openai/emacs-key.txt)

# Created by `pipx` on 2024-02-01 09:45:16
export PATH="$PATH:/Users/jsigman/.local/bin"

.zshrc

vterm_printf() {
    if [ -n "$TMUX" ] && ([ "${TERM%%-*}" = "tmux" ] || [ "${TERM%%-*}" = "screen" ]); then
        # Tell tmux to pass the escape sequences through
        printf "\ePtmux;\e\e]%s\007\e\\" "$1"
    elif [ "${TERM%%-*}" = "screen" ]; then
        # GNU screen (screen, screen-256color, screen-256color-bce)
        printf "\eP\e]%s\007\e\\" "$1"
    else
        printf "\e]%s\e\\" "$1"
    fi
}
vterm_prompt_end() {
    vterm_printf "51;A$(whoami)@$(hostname):$(pwd)"
}
setopt PROMPT_SUBST
PROMPT=$PROMPT'%{$(vterm_prompt_end)%}'

function remote() {
    local remote_host="$REMOTE_HOST"
    local remote_path="$REMOTE_PATH"

    ssh -t "${REMOTE_HOST}" "cd ${REMOTE_PATH} && exec \$SHELL -l"
}
function coder-start() {
    coder start $CODER_USERNAME/$CODER_INSTANCE_NAME
}
function dcv-connect() {
    coder port-forward $CODER_USERNAME/$CODER_INSTANCE_NAME --tcp 8443:8443 &
    open -a "DCV Viewer" --args localhost:8443
}

alias ls='ls --color=auto'

export LESSOPEN="| pygmentize -g %s"
export LESS='-R'

export PYENV_VERSION=3.8.13
eval "$(pyenv init -)"

eval "$(direnv hook zsh)"
direnv reload 2>/dev/null

eval "$(starship init zsh)"

autoload -U compinit
compinit

autoload -U select-word-style
select-word-style bash

source /Users/jsigman/.docker/init-zsh.sh || true # Added by Docker Desktop

alias brew86="arch -x86_64 /usr/local/bin/brew"
alias pyenv86="arch -x86_64 pyenv"
alias gitroot='cd $(git rev-parse --show-toplevel)'

# Created by `pipx` on 2024-02-01 09:45:16
export PATH="$PATH:/Users/jsigman/.local/bin"
export PATH="/opt/homebrew/opt/m4/bin:$PATH"

Extras

Pyrightconfig

{
  "venvPath": ".",
  "venv": "venv",
  "include": ["script", "tests"],
  "exclude": [
    "notes",
    "models",
    "notebooks",
    "docker",
    "**/node_modules",
    "**/__pycache__",
    ".git"
  ],
  "verboseOutput": true,
  "reportTypeshedErrors": true,
  "typeCheckingMode": false,
  "reportMissingImports": true,
  "reportMissingTypeStubs": false,
  "useLibraryCodeForTypes": true,
  "autoSearchPaths": true,
  "autoImportCompletions": false,
  "pythonVersion": "3.8.13"
  "stubPath": "typings",
}

Python project .dir-locals.el

((nil
  .
  ((flycheck-disabled-checkers . (python-mypy))
   (flycheck-flake8rc . ".flake8")
   (lsp-file-watch-threshold . 500)
   (projectile-indexing-method . hybrid)
   (eval . (setq-local cape-file-directory (projectile-project-root)))
   (eval .
         (setq-local lsp-file-watch-ignored-directories
                     (append
                      '("[/\\\\]\\data\\'")
                      lsp-file-watch-ignored-directories)))))
 (org-mode
  .
  ((eval .
         (progn
           (direnv-mode 't)
           (my/load-org-jupyter))))))



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